Genomic research

 

Consent 2.0

A better way of signing up for studies of your genes

IN AN age where people promiscuously post personal data on the web and regularly click “I agree” to reams of legalese they have never read, news of yet another electronic consent form might seem like a big yawn. But for the future of genomics-related research the Portable Legal Consent, to be announced shortly by Sage Bionetworks, a non-profit research organisation based in Seattle, is anything but mundane. Indeed, by reversing the normal way consent to use personal data is acquired from patients in clinical trials, it could spell a new relationship between scientists and the human subjects of their research, with potential benefits that extend well beyond genomics.

 

The heart of Portable Legal Consent is the notion that anyone who signs up for a clinical trial, or simply has his genome read in order to anticipate the risk of disease, should easily be able to share his genomic and health data not just with that research group or company, but with all scientists who are prepared in turn to accept some sensible rules about how they may use the data.
The main one of these is that the results of investigations which include such “open source” data must, themselves, be freely and publicly available. In much the same vein as the open-source-software movement, the purpose of this is to increase the long-term value of the data, by allowing them to be reused in ways that may not even have been conceived of at the time they were collected.

http://www.economist.com/node/21553418

2012 International Prize for Biology Open for Nominations

2012 International Prize for Biology Open for Nominations

 

The International Prize for Biology was instituted in April of 1985 by the Committee on the International Prize for Biology. It aims to commemorate the sixty-year reign of Emperor Showa and his longtime devotion to biological research and also to offer tribute to the present Emperor His Majesty Emperor Akihito, who has strived over many years to advance the study taxonomy of gobioid fishes while contributing continuously to the developing of this Prize. The award ceremony is held in the presence of His Majesty the Emperor.

 

http://www.jsps.go.jp/english/e-biol/


The specialty for the 2012 Prize is: Neurobiology
The deadline for receipt of nominations is: May 11, 2012
Here is the “Nomination Form

The value of a good editor

A hitherto-unknown way to evolve

Jan 7th 2012 | from the print edit

IN 1958 Francis Crick, one of the co-discoverers of the double-helical structure of DNA, spelled out what came to be called the “central dogma” of molecular biology. In a nutshell, this says that DNA makes RNA, which makes proteins. In other words DNA—which carries an organism’s genetic code—“writes” that code into bits of RNA, a similar, but not identical molecule. These then act as messengers which tell a cell’s protein-making machinery what to make.

It is a pithy and memorable summary. Sadly, reality is not quite so clear-cut. In a paper in Science, Sandra Garrett and Joshua Rosenthal of the University of Puerto Rico illustrate how the instructions in the DNA are not always followed faithfully. The RNA message can be rewritten before it is read. And that provides an extra opportunity for evolution to occur.

Dr Rosenthal and Ms Garrett were studying octopuses, looking for differences between those that live in warm, tropical water and those that inhabit the poles. They concentrated on the make-up of the ion channels in the animals’ cell membranes. These channels are cylindrical assemblages of protein molecules which help to control such things as the electrical activity of nerve cells and the release of hormones. The two researchers suspected that the channels found in warm-water species would not work well in the freezing temperatures that their polar cousins endure.

That turned out to be correct. What was odd was that the genes for the proteins involved were almost identical in warm- and cold-water animals. This surprised Dr Rosenthal and Ms Garrett, who had expected that natural selection would have changed the DNA, and thus the composition of the resulting protein.

Instead, differences in composition between warm-water and cold-water ion channels were the result of a phenomenon called RNA editing, in which special enzymes alter the structure of the RNA messenger, and thus of the final protein.

Though RNA editing has been observed before, in animals ranging from humans to nematode worms, this is the first time an edit has been tied to a clear evolutionary difference caused by a feature of the environment—in this case ambient temperature. Of course, it is not strictly a departure from Crick’s dogma. Enzymes, too, are proteins, and so are the transcription factors that regulate their production. Eventually, when the chain of causation is traced in full, the chances are that the underlying difference between polar and tropical octopuses will be in the DNA itself. RNA editing of this sort does, however, provide another way to drive evolution, and may help explain why animals (as opposed to, say, bacteria) are so complex.

Correction: Due to a last-minute editing error an earlier version of this article misstated the sex and academic degree of the researchers involved. Joshua Rosenthal holds a doctorate, and is male. Sandra Garrett is, of course, female, but not a PhD. This has been corrected online.